Full List of Publications

Mangione F, Titlow J, Maclachlan C, Gho M, Davis I, Collinson L, Tapon N. Co-option of epidermal cells enables touch sensing. Nat Cell Biol. PDF

Manuel Garcia-Moreno, Robin Truman, Honglin Chen, Louisa Iselin, Caroline E. Lenz, Jeff Lee, Kate Dicker, Marko Noerenberg, Thibault J.M. Sohier, Natasha Palmalux, Aino I. Järvelin, Wael Kamel, Vincenzo Ruscica, Emiliano P. Ricci, Ilan Davis, Shabaz Mohammed, Alfredo Castello. Incorporation of genome-bound cellular proteins into HIV-1 particles regulates viral infection bioRxiv 2023.06.14.544764; doi: https://doi.org/10.1101/2023.06.14.544764

Jeffrey Y Lee,Peter AC Wing, Dalia S Gala, Aino I Järvelin, Josh Titlow, Marko Noerenberg, Xiaodong Zhuang, Natasha Johnson, Louise Iselin, Mary Kay Thompson, Richard M Parton, Alan Wainman, Daniel Agranoff, William James, Alfredo Castello, Jane A McKeating, Ilan Davis Absolute quantitation of individual SARS-CoV-2 RNA molecules: a new paradigm for infection dynamics and variant differences. eLife PDF

Kamel W, Noerenberg, Cerikan B, Chen H Järvelin A, Kammoun M , Lee J, Shuai N, Garcia-Moreno M, Andrejeva A, Deery M, Neufeldt C, Cortese M, Knight6 M, Lilley K, Martinez J, Davis I, Bartenschlager R, Mohammed S and Castello A (2021) Global analysis of protein-RNA interactions in SARS-CoV-2 infected cells reveals key regulators of infection. Molecular Cell. PDF

Wing PAC, Keeley TP, Zhuang X, Lee JY, Prange-Barczynska M, Tsukuda S, Morgan SB, Harding AC, Argles ILA, Kurlekar S, Noerenberg M, Thompson CP, Huang KA, Balfe P, Watashi K, Castello A, Hinks TSC, James W, Ratcliffe PJ, Davis I, Hodson EJ, Bishop T, McKeating JA. (2021). Hypoxic and pharmacological activation of HIF inhibits SARS-CoV-2 infection of lung epithelial cells. Cell Reports PDF

Wickenhagen A, et al (2021) A prenylated dsRNA sensor protects against severe COVID-19. Science. PDF

Kamel W, Noerenberg, Cerikan B, Chen H Järvelin A, Kammoun M , Lee J, Shuai N, Garcia-Moreno M, Andrejeva A, Deery M, Neufeldt C, Cortese M, Knight6 

M, Lilley K, Martinez J, Davis I, Bartenschlager R, Mohammed S and Castello A (2020) Global analysis of protein-RNA interactions in SARS-CoV-2 infected cells reveals key regulators of infection. BioRxiv.  PDF 

Truman CT, Järvelin A, Davis I, Castello A. (2020) HIV Rev-isited. Open Biol. PDF 

Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, Sanz MA, Carrasco L, Ricci EP, Pelechano V, Davis I, Fischer B, Mohammed S, Castello A. (2019) System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Mol Cell. PDF

Moore S, Järvelin AI, Davis I, Bond GL, Castello A. (2018) Expanding horizons: new roles for non-canonical RNA-binding proteins in cancer. Curr Opin Genet Dev. PDF

Jingyu Wang, Danail Stoychev, Mick Phillips, David Miguel Susano Pinto, Richard M. Parton, Nick Hall, Josh Titlow, Ana Rita Faria, Matthew Wincott, Dalia Gala, Andreas Gerondopoulos, Niloufer Irani, Ian Dobbie, Lothar Schermelleh, Martin Booth, Ilan Davis. (2025) Deep super-resolution imaging of thick tissue using structured illumination with adaptive optics PDF eLife in press. 

Hu Q, Hailstone M, Wang J, Wincott M, Stoychev D, Atilgan H, Gala D, Chaiamarit T, Parton RM, Antonello J, Packer AM, Davis I, Booth MJ. (2024) Universal adaptive optics for microscopy through embedded neural network control. Light Sci Appl. PDF 

Olivares-Abri J, Joha J, Titlow JS, Davis, I. (2024) Optimisation of hybridisation-chain reaction method for imaging of single RNA molecules in Drosophila larvae. Fly 18(1). DOI: 10.1080/19336934.2024.2409968

Polcownuk, S., & Davis, I. (2024)Comprehensive database of fluorescence lifetime values for fluorochromes with emission peaks in the visible or near infrared [Data set]. Zenodo. DOI:  https://doi.org/10.5281/zenodo.11083940  

Hu Q, Hailstone M, Wang J, Wincott M, Stoychev D, Atilgan H, Gala D, Chaiamarit T, Parton RM, Antonello J, Packer AM, Davis I, Booth MJ. Universal adaptive optics for microscopy through embedded neural network control. Light Sci Appl. PDF

Jingyu Wang, Danail Stoychev, Mick Phillips, David Miguel Susano Pinto, Richard M. Parton, Nick Hall, Josh Titlow, Ana Rita Faria, Matthew Wincott, Dalia Gala, Andreas Gerondopoulos, Niloufer Irani, Ian Dobbie, Lothar Schermelleh, Martin Booth, Ilan Davis. Deep super-resolution imaging of thick tissue using structured illumination with adaptive optics PDF

David Miguel Miguel Susano Susano Pinto, Mick A Phillips, Nicholas Hall, Julio Mateos-Langerak, Danail Stoychev, Tiago Susano Pinto, Martin J Booth, Ilan Davis, Ian M Dobbie (2021) Python-Microscope: high performance control of arbitrarily complex and scalable bespoke microscopes. BioRxiv pre-print PDF

Phillips MA, Susano Pinto DM, Hall N, Mateos-Langerak J, Parton RM, Titlow J, Stoychev DV, Parks T, Pinto TS, Sedat JW, Booth MJ, Davis I, Dobbie IM. Microscope-Cockpit: Python-based bespoke microscopy for bio-medical science. Wellcome Open Research 6:76. PDF

Matthew Wincott, Andrew Jefferson, Ian M. Dobbie, Martin J. Booth, Ilan Davis, Richard M. Parton (2021) Democratising “Microscopi”: a 3D printed automated XYZT fluorescence imaging system for teaching, outreach and fieldwork Wellcome Open Research PDF

Hussain SA, Kubo T, Hall N, Gala D, Hampson K, Parton R, Phillips MA, Wincott M, Fujita K, Davis I, Dobbie I, Booth MJ. (2020) Wavefront-sensorless adaptive optics with a laser-free spinning disk confocal microscope. J Microsc. PDF

Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M. (2020) 3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway. Cell. PDF

Hailstone M, Waithe D, Samuels TJ, Yang L, Costello I, Arava Y, Robertson E, Parton RM, Davis I. (2020) CytoCensus, mapping cell identity and division in tissues and organs using machine learning. Elife. PDF

Michael A. Phillips, Maria Harkiolaki, David Miguel Susano Pinto, Richard M. Parton, Ana Palanca, Manuel Garcia-Moreno, Ilias Kounatidis, John W. Sedat, David I. Stuart, Alfredo Castello, Martin J. Booth, Ilan Davis, and Ian M. Dobbie. (2020) CryoSIM: super-resolution 3D structured illumination cryogenic fluorescence microscopy for correlated ultrastructural imaging. Optica PDF 

Žurauskas M, Dobbie IM, Parton RM, Phillips MA, Göhler A, Davis I, Booth MJ. (2019) IsoSense: frequency enhanced sensorless adaptive optics through structured illumination. Optica. PDF

122) Ceccarelli A, Browning AP, Chaiamarit T, Davis I, Baker RE (2025). A likelihood-based Bayesian inference framework for the calibration of and selection between stochastic velocity-jump models. arXiv:2505.19292. DOI:10.48550/arXiv.2505.19292. Submitted to Royal Society Interface. 

121) Manuel Garcia-Moreno M, Truman R, Chen H, Iselin L, Lenz CE, Lee J, Dicker K, Noerenberg M, Sohier TJM, Palmalux N , Järvelin AI, Kamel W, Ruscica V, Ricci EP, Davis I, Shabaz Mohammed S and Castello A (2025).Incorporation of genome-bound cellular proteins into HIV-1 particles regulates viral infection BioRxiv DOI: 10.1101/2023.06.14.544764. Under revision Cell Reports. 

120) Ruscica V, Iselin L, Hull R, Gu Q, Narayanan S, Palmalux N, Embarc-Buh A, Rolande De Lauren Z, Hugh J,  Noerenberg M, Kamel W, Igreja C, Robertson D, Mohammed S, Pelechano V, Davis I, Castello A (2025). Alphavirus replication is fed by XRN1-mediated cellular mRNA degradation. bioRxiv. DOI: 10.1101/2024.12.09.625895.  Under review in Nature Comm

119) Chapple KJ, Green TRF, Wirth S, Chen YH, Gerwig U, Aicher ML, Kim Y, Komarek L,  Brown A,  Crawford CL, Smith RS, Lee J,  View ORCID ProfileLuis Pardo-Fernandez, Rebecca E McHugh, Celia M. Kassmann, Hauke B. Werner,  Davis I, Kneussel M, Brown ER, Goebbels S,  Nave K-A, Edgar JM (2025).  A myelinic channel system for motor-driven organelle transport. bioRxiv. DOI: 10.1101/2024.06.02.591488. Under revision in Nature Neurosci.

118) Wang J, Stoychev D, Phillips M, Pinto DMS, Parton RM, Hall N, Titlow JS, Faria AR, Wincott M, Gala GS, Gerondopoulos A, Irani N, Dobbie I, Schermelleh L, Booth M, Davis I (2025). Deep super-resolution imaging of thick tissue using structured illumination with adaptive optics. bioRxiv DOI: 10.1101/2023.12.21.572818.  eLife, in press. 

*117) Lee JY, Huang N, Samuels TJ, Davis I (2025). Imp/IGF2BP and Syp/SYNCRIP temporal RNA interactomes uncover combinatorial networks of regulators of Drosophila brain development. Science Advances 11: eadr6682. DOI:10.1126/sciadv.adr6682.

116) Alphavirus infection triggers selective cytoplasmic translocation of nuclear RBPs with moonlighting antiviral roles. Wael Kamel W, Ruscica V, Embarc-Buh A, ..., Davis I, Mohammed S, Castello A (2024). Molecular Cell 84: 4896-4911. DOI: 10.1016/j.molcel.2024.11.015.

115) David Ish-Horowicz, FRS (1948-2024): outstanding scientific discovery, with a unique touch of selfless  humanity. Davis I (2024). Development 151: dev204429. DOI: 10.1242/dev.204429

114) Lee JY, Gala DS, Kiourlappou M, Olivares-Abri J, Joha J, Titlow JS, Teodoro RO, Davis I.  (2024). Murine glial protrusion transcripts predict localized Drosophila glial mRNAs involved in plasticity. Journal of Cell Biology, 223: e202306152. DOI: 10.1083/jcb.202306152.

113) Olivares-Abri J, Joha J, Titlow JS, Davis, I (2024). Optimisation of hybridisation-chain reaction method for imaging of single RNA molecules in Drosophila larvae. Fly 18: 2409968.  DOI: 10.1080/19336934.2024.2409968.

112) Polcownuk, S., & Davis, I (2024). Comprehensive database of fluorescence lifetime values for fluorochromes with emission peaks in the visible or near infrared Zenodo. DOI: 10.5281/zenodo.11083940.

111) Hu Q, Hailstone M, Wang J, Wincott M, Stoychev D, Atilgan D, Atilgan H, Gala D, Chaiamarit T, Parton RM, Antonello J, Packer AM, Davis I, Booth M. (2023) Universal adaptive optics for adaptive optics through embedded neural network control. arXiv: 2301.02647. 

110) Gala DS, Titlow JS, Teodoro RO, Davis I. (2023) Far from home: the role of glial mRNA localization in synaptic plasticity. RNA 29: 153-169. DOI: 10.1261/rna.079422.122.

109) Mangione F, Titlow J, Maclachlan C, Gho M, Davis I, Collinson L, Tapon N. Co-option of epidermal cells enables touch sensing. Natture Cell Biol  25:  540–549. DOI: 10.1038/s41556-023-01110-2

108) Kiourlappou M, Taylor S, and Davis I. (2023) Multi-Dimensional Data Viewer (MDV) user manual for data exploration: "Systematic analysis of YFP traps reveals common discordance between mRNA and protein across the nervous system”.  DOI: 10.5281/zenodo.6374011

107) Titlow JS, Kiourlappou M, Palanca A,  Lee J,  Gala DA, Ennis D, Yu J, Young F, Pinto D, Garforth S, Francis H, Striven F, Mulvey H, Dallman-Porter A, Thornton S, Arman D, Järvelin A, Thompson MK, Kounatidis I, Parton R, Taylor S, Davis I. (2023) Systematic analysis of YFP traps reveals common mRNA/protein discordance in neural tissues. Journal of Cell Biology 222: e202205129. DOI:10.1261/rna.079552.122.  Rich data visualisation of the 1400 figures of JCB paper: LINK (see reference 106 for the manual explaining how to use the data explorer).

106) Thompson MK, Ceccarelli A, Ish-Horowicz D and Davis I. (2023) Dynamically regulated transcription factors are encoded by highly unstable mRNAs in the Drosophila larval brain. RNA 29:1020–1032.  DOI: 10.1261/rna.079552.122.

105) Xia J, Pinto-Fernández A, Damianou A, Lee JY, Kessler BM, Davis I, Elliott P, Ligoxygakis P. (2022) BioRxiv DOI: 10.1101/2022.12.09.519782. 

104) Lee JY, Wing PAC,  Gala DA, Järvelin AI,  Titlow J, Noerenberg M, Chuang X,  Johnson N, Iselin L,  Thompson MK, Parton RM, Wainman A, Agranoff D,  James W, Castello A, McKeating JA, Davis I (2022). Absolute quantitation of individual SARS-CoV-2 RNA molecules: a new paradigm for infection dynamics and variant differences eLife 11:e74153DOI: 10.7554/eLife.74153

103) Wickenhagen A, et al. Davis I ,… (2001). A Prenylated dsRNA Sensor Protects Against Severe COVID-19. Science 374:6567 DOI: 10.1126/science.abj3624

102) Phillips MA, Susano Pinto DM, Hall N, Mateos-Langerak J, Parton RM, Titlow J, Stoychev DV, Parks T, Pinto TS, Sedat JW, Booth MJ, Davis I, Dobbie IM. Microscope-Cockpit: Python-based bespoke microscopy for bio-medical science. Wellcome Open Research 6:76. DOI: 10.12688/wellcomeopenres.16610.1.

101) Pinto DMS, Phillips MA, Hall N, Mateos-Langerak J, Stoychev D, Pinto TS, Booth MJ, Davis I, Dobbie IM (2021). Python-microscope: A new open source Python library for the control of microscopes. J Cell Sci. jcs.258955. DOI: 10.1242/jcs.258955.

100) Wing PAC, Keeley TP, Zhuang X, Lee JY, Prange-Barczynska M, Tsukuda S, Morgan SB, Harding AC, Argles ILA, Kurlekar S, Noerenberg M, Thompson CP, Huang KA, Balfe P, Watashi K, Castello A, Hinks TSC, James W, Ratcliffe PJ, Davis I, Hodson EJ, Bishop T, McKeating JA (2021). Hypoxic and pharmacological activation of HIF inhibits SARS-CoV-2 infection of lung epithelial cells. Cell Reports 35: 109020. DOI: 10.1016/j.celrep.2021.109020.  

99) Wincott M, Jefferson A, Dobbie IM, Booth MJ, Davis I, Parton RM (2021). Democratising "Microscopi": a 3D printed automated XYZT fluorescence imaging system for teaching, outreach and fieldwork. Wellcome Open Research6:63.  DOI: 10.12688/wellcomeopenres.16536.1. 

98) Kamel W, Noerenberg M, Cerikan B, Chen H, Järvelin AI, Kammoun M, Lee JY, Shuai N, Garcia-Moreno M, Andrejeva A, Deery MJ, Johnson N, Neufeldt CJ, Cortese M, Knight ML, Lilley KS, Martinez J, Davis I, Bartenschlager R, Mohammed S, Castello A  (2021). Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection, Molecular Cell,  81: 2851-2867.e7.  DOI: 10.1016/j.molcel.2021.05.023

97) Mitchell J, Smith CS, Titlow J, Otto N, van Velde P, Booth M, Davis I, Waddell S (2021). Selective dendritic localization of mRNA in Drosophila mushroom body output neurons. eLife. 10: e62770. DOI: 10.7554/eLife.62770.

96) Hussain SA, Kubo T, Hall N, Gala D, Hampson K, Parton R, Phillips MA, Wincott M, Fujita K, Davis I, Dobbie I, Booth MJ. Wavefront-sensorless adaptive optics with a laser-free spinning disk confocal microscope. J Microscopy. DOI: 10.1111/jmi.12976. 

95) Truman CT, Järvelin A, Davis I, Castello A (2020). HIV Rev-isited. Open Biology. 10: 200320. DOI:10.1098/rsob.200320

93) Thompson MK, Kiourlappou M, Davis I (2020). Ribo-Pop: simple, cost-effective, and widely applicable ribosomal RNA depletion. RNA J 26: 1731-1742. DOI: 10.1261/rna.076562.120. DOI: 10.1261/rna.076562.120

92) Phillips M, Harkiolaki M, Pinto DM, Partion RM, Palanca A, Garcia-Moreno M, Kounatidis I, Sedat JW, Stuart DI, Castello A, Booth MJ, Davis I, Dobbie IM (2020) CryoSIM: super resolution 3D structured illumination cryogenic fluorescence  microscopy for correlated ultra-structural imaging. Optica 7: 802-812 DOI: 10.1364/OPTICA.393203.

91) Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M  (2020). Correlative cryo-structured illumination fluorescence microscopy and soft X-ray tomography elucidates reovirus intracellular release pathway. Cell 182: 515–530.e17. DOI: 10.1016/j.cell.2020.05.051. 

90) Titlow J, Robertson F, Jarvelin A, Ish-Horowicz D, Smith C, Gratton E, Davis I (2020). Syncrip/hnRNPQ is required for activity-induced Msp300/Nesprin expression and new synapse formation. Journal of Cell Biology 219: 1-17.DOI: 10.1083/jcb.201903135

89) Samuels TJ, Arava Y, Järvelin AI, Robertson F, Lee JY, Yang L, Yang CP, Lee T, Ish-Horowicz D, Davis I (2020) Neuronal upregulation of Prospero protein is driven by alternative mRNA polyadenylation and Syncrip-mediated mRNA stabilisation. Biology Open 9: bio049684. DOI: 10.1242/bio.049684.

88) Hailstone M, Waithe D, Samuels T, Yang L, Costello I, Arava Y, Robertson E, Parton RM and Davis I (2020).CytoCensus, mapping cell identity and division in tissues and organs using machine learning. eLife 9:e51085. DOI: 10.7554/eLife.51085

87) Samuels T, Järvelin A,  Ish-Horowicz D, Davis I (2020). Imp/IGF2BP levels modulate individual neural stem cell growth and division through myc mRNA stability. eLife 9:e51529. DOI: 10.7554/eLife.51529

86) Garcia-Moreno M, Noerenberg M, Ni S, Järvelin AI, González-Almela E, Lenz CE, Bach-Pages M, Cox V, Avolio R, Davis T, Hester S, Sohier TJM, Li B, Heikel G, Michlewski G, Sanz MA, Carrasco L, Ricci EP, Pelechano V, Davis I, Fischer B, Mohammed S, Castello A (2019). System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Molecular Cell 74: 196-211.e11.

85) Harrison JU, Parton RM, Davis I, Baker RE (2019). Testing models of mRNA localization reveals robustness regulated by reducing transport between cells. Biophysics Journal S0006-3495(19) 30873-2

84) Vaz F., Kounatidis, F., Covas C., Parton RM, Harkiolaki M., Davis, I., Ligoxygakis P. (2019). Accessibility to peptidoglycan and not discrimination of the peptide moiety drives recognition of Gram-positive bacteria and bacilli in Drosophila. Cell Reports 27, 2480–2492.

83) Zurauskas M, Dobbie IM, Parton RM, Phillips MA, Gohler A, Davis I, and Booth MJ (2019) IsoSense: frequency enhanced sensorless adaptive optics through structured illumination. Optica 6: 370-379. 

82) Titlow J, Yang L, Parton R, Palanca A and Davis I (2018). Super-resolution single molecule FISH at the Drosophila neuromuscular junction. Methods in Molecular Biology 1649, RNA Detection pp 163-175.

81) Yang C-P, Samuels TJ, Huang Y, Yang L, Ish-Horowicz D, Davis I, Lee T (2017). Imp/Syp Temporal Gradients Govern Decommissioning Of Drosophila Neural Stem Cells. Development. 144(19):3454-3464.  

80) Yang L, Titlow J, Ennis D, Smith C, Mitchell J, Young FL, Waddell S, Ish-Horowicz D, Davis I (2017). Single molecule fluorescence in situ hybridisation for quantitating post-transcriptional regulation in Drosophila brains. Methods 126: 166-176.

79) Waithe D, Hailstone M, Lalwani MK, Parton RM, Yang L, Patient R, Eggeling C, Davis I (2016).  3-D Density Kernel Estimation for Counting in Microscopy Image Volumes Using 3-D Image Filters and Random Decision Trees. Computer Vision - ECCV 2016. Editors: Gang Jua and Hervé Jégou.

78) Pratt MB, Titlow JS, Davis I, Barker AR, Dawe HR, Raff JW and Roque H (2016). "Drosophila sensory cilia lacking MKS proteins exhibit striking defects in development but only subtle defects in adults." J Cell Science 129: 3732-3743.

77) Misra M, Edmund H, Ennis D, Schlueter M, Marot J, Tambasco J, Barlow I, Sigurbjornsdottir, Mathew R, Valles AM, Wojciech W, Roth S, Davis I, Leptin M and Gavis ER (2016). "A Genome-Wide Screen for Dendritically Localized RNAs Identifies Genes Required for Dendrite Morphogenesis." G3 (Bethesda) 6: 2397-2405.

76) Järvelin A, Noerenberg M, Davis I and Castello A (2016). "The new (dis)order in RNA regulation." Cell Communication Signal 14: 9.

75) Davidson A, Parton RM, Rabouille C, Weil TT and Davis I (2016). "Localized Translation of gurken/TGF-alpha mRNA during Axis Specification Is Controlled by Access to Orb/CPEB on Processing Bodies." Cell Reports 14: 2451-2462.

74) York-Andersen A, Parton RM, Bi C, Bromley CL, Davis I and Weil TT (2015). "A single and rapid calcium wave at egg activation in Drosophila." Biology Open 4: 553-560.

73) Johnson E, Seiradake E, Jones E, Davis I, Grunewald K and Kaufmann R (2015). "Correlative in-resin super-resolution and electron microscopy using standard fluorescent proteins." Scientific Reports 5: 9583.

72) Ball G, Demmerle J, Kaufmann R, Davis I, Dobbie IM and Schermelleh L (2015). "SIMcheck: a Toolbox for Successful Super-resolution Structured Illumination Microscopy." Scientific Reports 5: 15915.

70) Parton RM, Davidson A, Davis I and Weil TT (2014). "Subcellular mRNA localisation at a glance." J Cell Science127: 2127-2133.

69) McDermott SM, Yang L, Halstead JM, Hamilton RS, Meignin C and Davis I (2014). "Drosophila Syncrip modulates the expression of mRNAs encoding key synaptic proteins required for morphology at the neuromuscular junction." RNA J 20: 1593-1606.

68) Kaufmann R, Schellenberger P, Seiradake E, Dobbie IM, Jones EY, Davis I, Hagen C and Grunewald K (2014). "Super-resolution microscopy using standard fluorescent proteins in intact cells under cryo-conditions." Nano Lett14: 4171-4175. 

67) Halstead JM, Lin YQ, Durraine L, Hamilton RS, Ball G, Neely GG, Bellen HJ I and Davis I (2014). "Syncrip/hnRNP Q influences synaptic transmission and regulates BMP signaling at the Drosophila neuromuscular synapse." BiologyOpen 3: 839-849.

66) McDermott SM and Davis I (2013). "Drosophila Hephaestus/polypyrimidine tract binding protein is required for dorso-ventral patterning and regulation of signalling between the germline and soma." PLoS One 8: e69978.

65) Weil TT, Parton RM, Herpers B, Soetaert J, Veenendaal T, Xanthakis D, Dobbie IM, Halstead JM, Hayashi R, Rabouille C and Davis I (2012). "Drosophila patterning is established by differential association of mRNAs with P bodies." Nature Cell Biology 14: 1305-13.

64) Zhang F, Wang J, Xu J, Zhang Z, Koppetsch BS, Schultz N, Vreven T, Meignin C, Davis I, Zamore PD, Weng Z, Theurkauf WE (2012). UAP56 couples piRNA clusters to the perinuclear transposon silencing machinery. Cell. 151:871-84.

63) Weil TT, Parton RM and Davis I (2012). "Preparing individual Drosophila egg chambers for live imaging." JournalVisual Experimentation (60).

62) McDermott SM, Meignin C, Rappsilber J and Davis I (2012). "Drosophila Syncrip binds the gurken mRNA localisation signal and regulates localised transcripts during axis specification." Biology Open 1: 488-497.

61) Hartswood E, Brodie J, Vendra G, Davis I and Finnegan DJ (2012). "RNA:RNA interaction can enhance RNA localization in Drosophila oocytes." RNA 18(4): 729-737.

60) Ball G, Parton RM, Hamilton RS and Davis I (2012). "A cell biologist's guide to high resolution imaging." Methods Enzymology 504: 29-55. pubmed

59) Brown AN, Dobbie IM, Alakoskela J-M, Davis I and Davis DM (2012). Super-resolution imaging of remodeled synaptic actin reveals different synergies between NK cell receptors and integrins. Blood 120: 3729-3740.

58) Brown AC, Oddos S, Dobbie IM, Alakoskela JM, Parton RM, Eissmann P, Neil MA, Dunsby C, French PM, Davis I, Davis DM (2011). Remodelling of cortical actin where lytic granules dock at natural killer cell immune synapses revealed by super-resolution microscopy. PLoS Biology 9:e1001152. 

57) Dobbie IM, King E, Parton RM, Carlton PM, Sedat JW, Swedlow JR, Davis I (2010). OMX: a new platform for multimodal, multichannel wide-field imaging. Cold Spring Harb Protoc. 8:899-909.

56) Parton RM, Hamilton RS, Ball G, Yang L, Cullen CF,  Lu W, Ohkura H and Davis I (2011). "A PAR-1-dependent orientation gradient of dynamic microtubules directs posterior cargo transport in the Drosophila oocyte." Journal of Cell Biology 194: 121-135.

55) Hamilton RS and Davis I (2011). "Identifying and searching for conserved RNA localisation signals." Methods Molecular Biology 714: 447-466.

54) Dalgarno HI, Dalgarno PA, Dada AC, Towers CE, Gibson GJ, Parton RM, Davis I, Warburton RJ and Greenaway AH(2011). "Nanometric depth resolution from multi-focal images in microscopy." J Royal Society Interface 8: 942-951.

53) Yang L, Parton RM, Ball G, Qiu Z, Greenaway AH, Davis I and Lu W (2010). An adaptive non-local means filter for denoising live-cell images and improving particle detection. J Structural Biology 172: 233-243.

52) Weil TT, Xanthakis D, Parton RM, Dobbie IM, Rabouille C, Gavis ER and Davis I (2010). Distinguishing direct from indirect roles for bicoid mRNA localization factors. Development 137: 169-176.

51) Hamilton RS, Parton RM, Oliveira RA, Vendra G, Ball G, Nasmyth K and Davis I (2010). ParticleStats: open source software for the analysis of particle motility and cytoskeletal polarity. Nucleic Acids Research 38 (Web Server issue): W641-646.

50) Oliveira, RA, Hamilton RS, Pauli A, Davis I and Nasmyth K (2010). Cohesin cleavage and Cdk inhibition trigger formation of daughter nuclei. Nature Cell Biology 12(2): 185-192.

49) Weil TT, Parton RM and Davis I (2010). Making the message clear: visualizing mRNA localization. Trends Cell Biology 20: 380-390.

48) Parton RM, Valles AM, Dobbie IM and Davis I (2010). Isolation of Drosophila egg chambers for imaging. Cold Spring Harb Protoc 2010(4): pdb prot5402. pubmed

47) Parton RM, Valles AM, Dobbie IM and Davis I (2010). Collection and mounting of Drosophila embryos for imaging. Cold Spring Harb Protoc 2010(4): pdb prot5403. pubmed

46) Parton RM, Valles AM, Dobbie IM and Davis I (2010). Drosophila macrophage preparation and screening. Cold Spring Harb Protoc 2010(4): pdb prot5404. pubmed

45) Parton RM, Valles AM, Dobbie IM and Davis I (2010). Drosophila larval fillet preparation and imaging of neurons.Cold Spring Harb Protoc 2010(4): pdb prot5405. pubmed

44) Parton RM, Valles AM, Dobbie IM and Davis I (2010). Live cell imaging in Drosophila melanogaster. Cold Spring Harb Protoc 2010(4): pdb top75. pubmed

43) Parton RM and Davis I (2010). How the sea squirt nucleus tells mesoderm not to be endoderm. Developmental Cell 19: 487-488.

42) Meignin C and Davis I (2010). Transmitting the message: intracellular mRNA localization. Current Opinions Cell Biology 22: 112-119.

41) Hamilton RS, Hartswood E, Vendra G, Jones C, Van De Bor V, Finnegan D and Davis I (2009). A bioinformatics search pipeline, RNA2DSearch, identifies RNA localization elements in Drosophila retrotransposons. RNA 15: 200-207.

40) Davis I (2009). The 'super-resolution' revolution. Bioch Soc Trans 37: 1042-1044.fulltext

39) Beckett MG, Allton CR, Davies CT,  Davis I, Flynn JM, Grant EJ, Hamilton RS, Irving AC, Kenway RD, OstrowskiRH, Perry JT, Swedlow JR and Trew A (2009). Building a scientific data grid with DiGS. Philos Trans A Math Phys Eng Sci 367: 2471-2481. fulltext

38) Zimyanin VL, Belaya K, Pecreaux J, Gilchrist MJ, Clark A, Davis I and St Johnston D (2008). In vivo imaging of oskar mRNA transport reveals the mechanism of posterior localization. Cell 134: 843-853.

37) Weil TT, Parton RM, Davis I and Gavis ER (2008). Changes in bicoid mRNA anchoring highlight conserved mechanisms during the oocyte-to-embryo transition. Current Biology 18: 1055-1061.

36) Pickard BS, Knight HM, Hamilton RS, Soares DC, Walker R, Boyd JK, Machell J, Maclean A, McGhee KA, Condie A, Porteous DJ, St Clair D, Davis I, Blackwood DH and Muir WJ (2008). A common variant in the 3'UTR of the GRIK4 glutamate receptor gene affects transcript abundance and protects against bipolar disorder. PNAS 105: 14940-14945.

35) Meignin C and Davis I (2008). UAP56 RNA helicase is required for axis specification and cytoplasmic mRNA localization in Drosophila. Developmental Biology 315: 89-98.

34) Vendra G, Hamilton RS and Davis I (2007). Dynactin suppresses the retrograde movement of apically localized mRNA in Drosophila blastoderm embryos. RNA Journal. 13: 1860-1867.

33) Tekotte H, Tollervey D and Davis I (2007). Imaging the migrating border cell cluster in living Drosophila egg chambers. Developmental Dynamics 236: 2818-2824.

32) Meignin C,  Alvarez-Garcia I, Davis I and Palacios IM (2007). The salvador-warts-hippo pathway is required for epithelial proliferation and axis specification in Drosophila. Curr Biol 17: 1871-1878.

31) Hamilton RS and Davis I (2007). RNA localization signals: deciphering the message with bioinformatics. Semininars Cell Developmental Biology 18: 178-185.

30) Delanoue R, Herpers B., Soetaert J., Davis I and Rabouille C (2007). Drosophila Squid/hnRNP helps Dynein switch from a gurken mRNA transport motor to an ultrastructural static anchor in sponge bodies. Dev Cell 13: 523-538.

29) Clark A, Meignin C and Davis I (2007). A Dynein-dependent shortcut rapidly delivers axis determination transcripts into the Drosophila oocyte. Development 134: 1955-1965.

28) Tekotte H and Davis I (2006). Bruno: a double turn-off for Oskar. Developmental Cell 10: 280-281.

27) Davis I and Parton RM (2006). Fluorescent reagents for live cell imaging and their introduction into cells. Cold Spring Harbor Protoc. pubmed

26) Davis I and Parton RM (2006). Selection of appropriate imaging equipment and methodology for live cell imaging in Drosophila. Cold Spring Harbor Protoc. pubmed

25) Davis I and Parton RM (2006). Time-lapse cinematography in living Drosophila tissues: preparation of material. Cold Spring Harbor Protoc. pubmed

24) Van De Bor V, Hartswood E, Jones C, Finnegan D and Davis I (2005). gurken and the I factor retrotransposon RNAs share common localization signals and machinery. Developmental Cell 9: 51-62.

*23) Delanoue R and Davis I (2005). Dynein anchors its mRNA cargo after apical transport in the Drosophila blastoderm embryo. Cell 122: 97-106.

22) Van de Bor V and Davis I (2004). mRNA localisation gets more complex. Current Opinions Cell Biology 16: 300-307.

21) Davis I (2004). A helicase that gets Oskar's message across. Nature Cell Biology 6: 285-287.

20) MacDougall N, Clark A, MacDougall E and Davis I (2003). Drosophila gurken (TGFalpha) mRNA localizes as particles that move within the oocyte in two Dynein-dependent steps. Developmental Cell 4: 307-319.

19) Tekotte H and Davis I (2002). Intracellular mRNA localization: motors move messages. Trends in Genetics 18: 636-642.

18) Tekotte H, Berdnik D, Torok T, Buszczak M, Jones LM, Cooley L, Knoblich JA and Davis I (2002). Dcas is required for importin-alpha3 nuclear export and mechano-sensory organ cell fate specification in Drosophila. DevelopmentalBiology 244: 396-406.

17) Bownes M, Charlesworth B, Davis I, Finnegan D, Heck M, Jarman A, Keegan L, Ohkura H, Rabouille C (2002). Report on the 17(th) European Drosophila research conference. Bioessays 24: 99-101. 

16) Wilkie GS, Zimyanin V, Kirby R, Korey C, Francis-Lang H, Van Vactor D and Davis I (2001). Small bristles, the Drosophila ortholog of NXF-1, is essential for mRNA export throughout development. RNA Journal 7: 1781-1792.

15) Wilkie GS and Davis I (2001). Drosophila wingless and pair-rule transcripts localize apically by Dynein mediated transport of RNA particles. Cell 105: 209-219. 

14) MacDougall N, Lad Y, Wilkie GS, H. Francis-Lang, W. Sullivan and I. Davis (2001). Merlin, the Drosophila homologue of neurofibromatosis-2, is specifically required in posterior follicle cells for axis formation in the oocyte. Development 128:665-673.

13) Kumar JP, Wilkie GS, Tekotte H, Moses K and Davis I (2001). Perturbing nuclear transport in Drosophila eye imaginal discs causes specific cell adhesion and axon guidance defects. Developmental Biology 240: 315-325.

12) Korey CA, Wilkie GS, Davis I and Van Vactor D (2001). small bristles is required for the morphogenesis of multiple tissues during Drosophila development. Genetics 159: 1659-1670.

11) Davis I (2000). Imaging fluorescence in thick Drosophila specimens. Chapter in: "Protein localization using fluorescence microscopy: a practical approach” Editor: Allan, V. Publisher: OUP. Chapter 5, p133. 

10) Wilkie GS, Shermoen AW, O’Farrell PH and Davis I (1999). Transcribed genes are localized according to chromosomal position within polarized Drosophila embryonic nuclei. Current Biology 9: 1263-1266.

9) Davis I (1999) GFP in motion: Live Fluorescent imaging using Green Fluorescent Protein. Editors: Ludin and Matus.  Trends in Cell Biology, supplement. 

8) Wilkie GS and Davis I (1998). High resolution and sensitive mRNA in situ hybridisation using fluorescent tyramide signal amplification. Technical Tips Online t01458.

7) Davis I (1997). Nuclear polarity and nuclear trafficking in Drosophila. Seminars Cell Developmental Biology 8: 91-97.

6) Francis-Lang H, Davis I and Ish-Horowicz D (1996). Asymmetric localization of Drosophila pair-rule transcripts from displaced nuclei: evidence for directional nuclear export. EMBO Journal 15: 640-649.

5) Davis I, Girdham CH and O’Farrell PH (1995). A nuclear GFP that marks nuclei in living Drosophila embryos; maternal supply overcomes a delay in the appearance of zygotic fluorescence. Developmental Biology 170: 726-729.

4) Francis-Lang H, Davis I, Ish-Horowicz D (1994) Segmentation and cell architecture in Drososophila embryos.  Cell Biology International Reports. 18, Suppl. p368. 

3) Davis I, Francis-Lang H and Ish-Horowicz D (1993). Mechanisms of intracellular transcript localization and export in early Drosophila embryos. Cold Spring Harbor Symposium in Quantitative Biology 58: 793-798.

2) Davis I and Ish-Horowicz D (1991) Apical Localization of Pair-rule Transcripts Requires 3’ Sequences and Limits Protein Diffusion in the Drosophila Blastoderm Embryo. Cell 67: 927-940.

1) Davis I and Ish-Horowicz D (1990) Intracellular transcript localization in early Drosophila embryos. Cell BiologyInternational Reports 14. Suppl. p9.